Skip to main content
Atlas logoAtlas
AboutPricingDocsBlog
Documentation
  • Tutorials
  • How-to guides
  • Reference
  • Explanation
Getting started
  • Start here
  • Your first research project in Atlas
  • Add your first source
Projects
  • Work with the three-panel workspace
  • Create and manage projects
  • Project structure
Sources
  • Import a PDF into Atlas
  • Add a website source
  • Add a YouTube source
  • Search and add academic papers
  • Read PDFs
  • Source types
  • PDF viewer
Chat & citations
  • Ask a grounded question
  • Synthesize across multiple sources
  • Follow citations back to source
  • Use mentions in chat and notes
  • Use web search
  • Add files to chat
  • Citation system
  • Search modes
  • How Atlas grounds answers in sources
  • Verifiable AI: the citation trust model
Notes
  • Write your first note
  • Import Markdown notes
  • Note editor
  • Note editor formatting
Knowledge maps
  • Generate a knowledge map
  • Edit and export a knowledge map
  • Knowledge map controls
  • Map node types
  • Why visual knowledge maps
Semantic maps
  • Read the semantic map
  • Semantic map controls
Search, summaries & questions
  • Find research in a project
  • Use summaries to triage sources
  • Summaries
  • Question suggestions
Workspace
  • Use tabs and split view
  • Workspace layout
  • Command palette
  • Keyboard shortcuts
  • Mobile app
Account, billing & limits
  • Sign in and reset your password
  • Manage billing
  • Delete your account
  • Plans and limits
  • Attachments
Troubleshooting
  • Troubleshoot source processing
  • Troubleshoot citations and weak answers
  • Troubleshoot billing and limits
  • Troubleshoot mobile and browser issues

Import Markdown notes

Use this guide to bring existing Markdown notes into an Atlas project so they become searchable, mentionable material.

Before you start

Review your files before importing. Remove private drafts, unrelated notes, duplicates, and files that belong in a different project.

Use clear, descriptive filenames. Atlas can preserve or infer a note title from the filename, so a clear name makes it easier to identify notes after import.

Steps

  1. Open the destination project.
  2. Select the note import option from the note creation menu.
  3. Choose a single Markdown file or a folder of Markdown files.
  4. Wait for the import to finish.
  5. Open the imported notes list and review the results.

Check the imported notes

After import, open several high-value notes and confirm:

  • Headings, bullets, and task lists look correct.
  • Tables and code blocks render as expected.
  • Any links still point to the right places.
  • Math or special formatting appears correctly if you use it.

Markdown from different editors varies. Treat the first import as a review pass, not just a transfer.

After import

Search for an imported note to confirm it is findable. Mention it in chat using @ when you want Atlas to use it as context for an answer.

If imported notes reference sources that are already in the project, add @ mentions to connect them.

Troubleshooting

ProblemWhat to do
Formatting changed on importReview Note editor formatting for what Atlas supports
Duplicate notes appearRemove duplicates from the source folder before re-importing
Links brokeUpdate links after import if they reference external tools

Related topics

  • Note editor
  • Use mentions in chat and notes
  • Note editor formatting

On this page

Atlas logo
Atlas

The visual and verifiable workspace
for understanding research papers.

Product

  • About
  • Features
  • Pricing
  • Docs

Resources

  • Blog
  • Researchers
  • Students
  • Analysts

Company

  • Support
  • Contact
  • Terms of Service
  • Privacy Policy

© 2026 AgentScale AI Pte. Ltd. All rights reserved.

Featured on Twelve ToolsFeatured on Wired BusinessMonitor your Domain Rating with FrogDRAgentHunter BadgeFeatured on findly.tools