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Documentation
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Getting started
  • Start here
  • Your first research project in Atlas
  • Add your first source
Projects
  • Work with the three-panel workspace
  • Create and manage projects
  • Project structure
Sources
  • Import a PDF into Atlas
  • Add a website source
  • Add a YouTube source
  • Search and add academic papers
  • Read PDFs
  • Source types
  • PDF viewer
Chat & citations
  • Ask a grounded question
  • Synthesize across multiple sources
  • Follow citations back to source
  • Use mentions in chat and notes
  • Use web search
  • Add files to chat
  • Citation system
  • Search modes
  • How Atlas grounds answers in sources
  • Verifiable AI: the citation trust model
Notes
  • Write your first note
  • Import Markdown notes
  • Note editor
  • Note editor formatting
Knowledge maps
  • Generate a knowledge map
  • Edit and export a knowledge map
  • Knowledge map controls
  • Map node types
  • Why visual knowledge maps
Semantic maps
  • Read the semantic map
  • Semantic map controls
Search, summaries & questions
  • Find research in a project
  • Use summaries to triage sources
  • Summaries
  • Question suggestions
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  • Use tabs and split view
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  • Sign in and reset your password
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Troubleshooting
  • Troubleshoot source processing
  • Troubleshoot citations and weak answers
  • Troubleshoot billing and limits
  • Troubleshoot mobile and browser issues

Project structure

A project is the top-level container for a research context in Atlas. It groups the original material, your notes, AI-generated views, and conversations for one topic or deliverable.

Project artifacts

ArtifactRole
SourceOriginal material Atlas can process, search, summarize, map, and cite.
NoteUser-authored research knowledge, synthesis, and follow-up work.
ChatA conversation for asking grounded questions against project context.
Knowledge mapA visual structure generated from source material.
Semantic mapA broader landscape view across project items and concepts.
SummaryA compact reading or triage artifact derived from project material.
CitationA verification link back to source evidence.

Isolation

Project material belongs to the project where it was created or imported. Before adding sources or asking questions, check that the correct project is open.

This matters because retrieval, citations, maps, and summaries depend on project context.

Naming projects

Use names that describe the actual research work:

  • "RAG citation trust model"
  • "Q3 customer interview synthesis"
  • "Literature review: visual knowledge maps"
  • "Competitor docs analysis"
  • "Thesis chapter 2 sources".

Avoid names like "Test", "New project", or "Research" unless the project is disposable.

Project hygiene

Keep a project focused enough that its sources and notes are relevant to the same research question. If two topics need different evidence bases, split them into separate projects. If they need to be compared, keep the comparison in a note or synthesis inside a broader project.

Mental model

Sources are the evidence base. Notes are your authored layer. Chat is the question-answering interface. Maps and summaries are generated reading aids. Citations connect generated claims back to evidence.

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for understanding research papers.

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